PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00192.1_g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 255aa    MW: 28633 Da    PI: 6.7293
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00192.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59e-2087136255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a++k++g
  Rsa1.0_00192.1_g00021.1  87 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDEAALKFKG 136
                              69*******.**********93....36************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-1487136IPR001471AP2/ERF domain
PROSITE profilePS5103224.94887144IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-2287145IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-3387145IPR001471AP2/ERF domain
CDDcd000182.10E-2087145No hitNo description
SMARTSM003804.7E-3787150IPR001471AP2/ERF domain
PRINTSPR003671.6E-118899IPR001471AP2/ERF domain
PRINTSPR003671.6E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MNNGKRPFRA GESEEKKEGD DDENIFPFFS ARSEYDTRAM VSALTQVIGN QSSTHDNNLH  60
HPVEYSQQDP IQHVPPTQDQ GKLRKIHYRG VRQRPWGKWA AEIRDPQKAA RVWLGTFETA  120
EAAALAYDEA ALKFKGSKAK LNFPERAQLA SNTSTITGPP NYYSSNNQTY YSNPQTNPET  180
IPYYNHYYYN QYLQQGGNSN DVLGYSLAGG ETGGSIYSHQ TLSNTTSSSS GGSSRQQEDY  240
TRFWHFGDSS PNSGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2687146262ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00495DAPTransfer from AT5G07310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132220.11e-157PREDICTED: ethylene-responsive transcription factor ERF115-like
SwissprotQ9LY291e-133EF115_ARATH; Ethylene-responsive transcription factor ERF115
TrEMBLM4CNZ41e-157M4CNZ4_BRARP; Uncharacterized protein
STRINGBra005932.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52921851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-101ERF family protein